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  5. Cpa|evm.model.tig00000388.52

Cpa|evm.model.tig00000388.52


Description : Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component


Gene families : OG0000902 (Archaeplastida) Phylogenetic Tree(s): OG0000902_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000388.52
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00203p00034930 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.04 Archaeplastida
Cre08.g364050 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01008831001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
LOC_Os04g01970.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
LOC_Os11g08080.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
LOC_Os12g07730.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
MA_10432371g0010 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
MA_10432371g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10435735g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c2_24980V3.1 No alias switch subunit 3 0.02 Archaeplastida
Smo442222 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
Solyc01g109510.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
Solyc04g082760.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032451 SMARCC_C 1097 1177
IPR001005 SANT/Myb 928 954
IPR007526 SWIRM 531 584
IPR032450 SMARCC_N 7 289
No external refs found!