Cpa|evm.model.tig00000403.82


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REA1 assembly factor (MDN1)


Gene families : OG0003847 (Archaeplastida) Phylogenetic Tree(s): OG0003847_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000403.82
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00107150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
AT1G67120 No alias ATPases;nucleotide binding;ATP... 0.03 Archaeplastida
Cre03.g161800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
GSVIVT01016794001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Gb_21123 No alias LSU ribosomal large subunit export factor (MDN1) 0.03 Archaeplastida
LOC_Os10g31856.1 No alias Midasin OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os10g31864.1 No alias LSU ribosomal large subunit export factor (MDN1) 0.02 Archaeplastida
MA_16845g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_91092g0010 No alias Midasin OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_91092g0020 No alias Midasin OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp1g16360.1 No alias LSU ribosomal large subunit export factor (MDN1) 0.04 Archaeplastida
Pp3c8_22130V3.1 No alias ATPases;nucleotide binding;ATP... 0.02 Archaeplastida
Solyc04g072260.3.1 No alias LSU ribosomal large subunit export factor (MDN1) 0.09 Archaeplastida
Zm00001e031919_P002 No alias LSU ribosomal large subunit export factor (MDN1) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011704 ATPase_dyneun-rel_AAA 1307 1436
IPR011704 ATPase_dyneun-rel_AAA 932 995
IPR011704 ATPase_dyneun-rel_AAA 638 774
IPR011704 ATPase_dyneun-rel_AAA 360 493
IPR011704 ATPase_dyneun-rel_AAA 241 340
IPR011704 ATPase_dyneun-rel_AAA 1041 1123
IPR011704 ATPase_dyneun-rel_AAA 1699 1784
No external refs found!