AT1G70060 (SNL4)

Aliases : SNL4

Description : SIN3-like 4

Gene families : OG0000780 (Archaeplastida) Phylogenetic Tree(s): OG0000780_tree ,
OG_05_0001649 (LandPlants) Phylogenetic Tree(s): OG_05_0001649_tree ,
OG_06_0003070 (SeedPlants) Phylogenetic Tree(s): OG_06_0003070_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G70060
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001155.28	No alias	Paired amphipathic helix protein Sin3-like 1...	0.02	Archaeplastida
Cre03.g180800	No alias	Paired amphipathic helix protein Sin3-like 4...	0.02	Archaeplastida
GSVIVT01020136001	No alias	Chromatin organisation.histone modifications.histone...	0.03	Archaeplastida
GSVIVT01032579001	No alias	Chromatin organisation.histone modifications.histone...	0.06	Archaeplastida
Gb_11760	No alias	component SNL of histone deacetylase machineries	0.04	Archaeplastida
LOC_Os01g01960.1	No alias	component SNL of histone deacetylase machineries	0.03	Archaeplastida
LOC_Os05g01020.2	No alias	component SNL of histone deacetylase machineries	0.03	Archaeplastida
MA_18241g0010	No alias	component SNL of histone deacetylase machineries	0.03	Archaeplastida
MA_35393g0010	No alias	No annotation	0.03	Archaeplastida
Pp3c8_14940V3.1	No alias	SIN3-like 4	0.04	Archaeplastida
Solyc02g067570.3.1	No alias	component SNL of histone deacetylase machineries	0.06	Archaeplastida
Solyc02g087360.4.1	No alias	component SNL of histone deacetylase machineries	0.02	Archaeplastida
Zm00001e017111_P002	No alias	component SNL of histone deacetylase machineries	0.03	Archaeplastida
Zm00001e025644_P001	No alias	component SNL of histone deacetylase machineries	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010048	vernalization response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0099402	plant organ development	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0002218	activation of innate immune response	IEP	Neighborhood
BP	GO:0002253	activation of immune response	IEP	Neighborhood
BP	GO:0002683	negative regulation of immune system process	IEP	Neighborhood
BP	GO:0002684	positive regulation of immune system process	IEP	Neighborhood
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Neighborhood
BP	GO:0002832	negative regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003774	motor activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004559	alpha-mannosidase activity	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0006333	chromatin assembly or disassembly	IEP	Neighborhood
BP	GO:0006366	transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0006935	chemotaxis	IEP	Neighborhood
BP	GO:0007062	sister chromatid cohesion	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008022	protein C-terminus binding	IEP	Neighborhood
MF	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009553	embryo sac development	IEP	Neighborhood
BP	GO:0009593	detection of chemical stimulus	IEP	Neighborhood
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009870	defense response signaling pathway, resistance gene-dependent	IEP	Neighborhood
BP	GO:0009880	embryonic pattern specification	IEP	Neighborhood
BP	GO:0009910	negative regulation of flower development	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010072	primary shoot apical meristem specification	IEP	Neighborhood
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Neighborhood
BP	GO:0010113	negative regulation of systemic acquired resistance	IEP	Neighborhood
BP	GO:0010154	fruit development	IEP	Neighborhood
BP	GO:0010183	pollen tube guidance	IEP	Neighborhood
BP	GO:0010247	detection of phosphate ion	IEP	Neighborhood
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	Neighborhood
BP	GO:0010431	seed maturation	IEP	Neighborhood
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
MF	GO:0015923	mannosidase activity	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
BP	GO:0016925	protein sumoylation	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019789	SUMO transferase activity	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
BP	GO:0030029	actin filament-based process	IEP	Neighborhood
BP	GO:0030048	actin filament-based movement	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0031349	positive regulation of defense response	IEP	Neighborhood
BP	GO:0032101	regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032102	negative regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0040011	locomotion	IEP	Neighborhood
BP	GO:0042330	taxis	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
BP	GO:0043901	negative regulation of multi-organism process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0045089	positive regulation of innate immune response	IEP	Neighborhood
BP	GO:0045595	regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045824	negative regulation of innate immune response	IEP	Neighborhood
BP	GO:0048438	floral whorl development	IEP	Neighborhood
BP	GO:0048467	gynoecium development	IEP	Neighborhood
BP	GO:0048468	cell development	IEP	Neighborhood
BP	GO:0048585	negative regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0050777	negative regulation of immune response	IEP	Neighborhood
BP	GO:0050778	positive regulation of immune response	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0050918	positive chemotaxis	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051301	cell division	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051645	Golgi localization	IEP	Neighborhood
BP	GO:0051646	mitochondrion localization	IEP	Neighborhood
BP	GO:0060151	peroxisome localization	IEP	Neighborhood
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0090352	regulation of nitrate assimilation	IEP	Neighborhood
BP	GO:0090421	embryonic meristem initiation	IEP	Neighborhood
BP	GO:0090436	leaf pavement cell development	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901419	regulation of response to alcohol	IEP	Neighborhood
BP	GO:1901420	negative regulation of response to alcohol	IEP	Neighborhood
BP	GO:1903314	regulation of nitrogen cycle metabolic process	IEP	Neighborhood
BP	GO:1905957	regulation of cellular response to alcohol	IEP	Neighborhood
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	Neighborhood
BP	GO:2000070	regulation of response to water deprivation	IEP	Neighborhood
BP	GO:2000242	negative regulation of reproductive process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	442	534
IPR003822	PAH	31	75
IPR003822	PAH	119	162
IPR003822	PAH	323	364
IPR031693	Sin3_C	1039	1284

External Links

No external refs found!

AT1G70060 (SNL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation