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  5. Cpa|evm.model.tig00000480.60

Cpa|evm.model.tig00000480.60


Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm4 component


Gene families : OG0001157 (Archaeplastida) Phylogenetic Tree(s): OG0001157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000480.60
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00047670 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
AMTR_s00045p00214370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
AT5G27720 emb1644 Small nuclear ribonucleoprotein family protein 0.01 Archaeplastida
Cre06.g251300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
GSVIVT01013364001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
GSVIVT01027986001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.01 Archaeplastida
Gb_34302 No alias component LSm4 of U6-associated LSm accessory... 0.01 Archaeplastida
MA_159534g0010 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
MA_98884g0010 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 Archaeplastida
Mp1g11210.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Mp1g27390.1 No alias component LSm4 of U6-associated LSm accessory... 0.02 Archaeplastida
Pp3c18_21750V3.1 No alias Small nuclear ribonucleoprotein family protein 0.01 Archaeplastida
Solyc02g062240.3.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 Archaeplastida
Solyc03g033600.3.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Zm00001e017261_P001 No alias component LSm4 of U6-associated LSm accessory... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 6 69
No external refs found!