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  5. Cpa|evm.model.tig00000489.16

Cpa|evm.model.tig00000489.16


Description : DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana


Gene families : OG0001515 (Archaeplastida) Phylogenetic Tree(s): OG0001515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000489.16
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00172100 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.01 Archaeplastida
AMTR_s00078p00191830 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.02 Archaeplastida
AT3G24495 MSH7, ATMSH7, MSH6-2 MUTS homolog 7 0.03 Archaeplastida
Cre05.g235750 No alias DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01015407001 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.02 Archaeplastida
Gb_18995 No alias DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g08540.1 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.02 Archaeplastida
LOC_Os09g24220.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.04 Archaeplastida
Mp7g16850.1 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida
Pp3c20_1350V3.1 No alias MUTS homolog 6 0.01 Archaeplastida
Solyc01g079520.3.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 583 650
IPR007696 DNA_mismatch_repair_MutS_core 792 1047
IPR007695 DNA_mismatch_repair_MutS-lik_N 444 573
IPR000432 DNA_mismatch_repair_MutS_C 1114 1220
No external refs found!