AT1G06760


Description : winged-helix DNA-binding transcription factor family protein


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0047826 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0042659 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G06760

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00112340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.07 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.18 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.05 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.12 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.22 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.06 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.11 Archaeplastida
MA_10428525g0020 No alias linker histone (H1) 0.05 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.03 Archaeplastida
MA_11137g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_11231g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.09 Archaeplastida
MA_5293931g0010 No alias No annotation 0.05 Archaeplastida
MA_6251451g0010 No alias No annotation 0.05 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.08 Archaeplastida
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.04 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.05 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.12 Archaeplastida
Zm00001e006018_P006 No alias linker histone (H1) 0.04 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.12 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome ISS Interproscan
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006334 nucleosome assembly ISS Interproscan
Type GO Term Name Evidence Source
MF GO:0004067 asparaginase activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006516 glycoprotein catabolic process IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006530 asparagine catabolic process IEP Neighborhood
BP GO:0009063 cellular amino acid catabolic process IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009065 glutamine family amino acid catabolic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009068 aspartate family amino acid catabolic process IEP Neighborhood
BP GO:0009100 glycoprotein metabolic process IEP Neighborhood
BP GO:0009292 genetic transfer IEP Neighborhood
BP GO:0009294 DNA mediated transformation IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
BP GO:0033345 asparagine catabolic process via L-aspartate IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0044764 multi-organism cellular process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901606 alpha-amino acid catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 62 128
No external refs found!