Cpa|evm.model.tig00000605.11

Description : rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana

Gene families : OG0004938 (Archaeplastida) Phylogenetic Tree(s): OG0004938_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000605.11
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AT3G11964	No alias	RNA binding;RNA binding	0.06	Archaeplastida
Cre10.g428750	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
GSVIVT01033430001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Gb_10495	No alias	SSU processome assembly factor (RRP5)	0.02	Archaeplastida
LOC_Os07g10350.1	No alias	SSU processome assembly factor (RRP5)	0.04	Archaeplastida
MA_10428306g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
Mp1g12810.1	No alias	SSU processome assembly factor (RRP5)	0.04	Archaeplastida
Pp3c4_30330V3.1	No alias	RNA binding;RNA binding	0.05	Archaeplastida
Smo148115	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Solyc03g051900.4.1	No alias	SSU processome assembly factor (RRP5)	0.06	Archaeplastida
Zm00001e033067_P004	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR008847	Suf	70	186
IPR025487	DUF4379	404	455
IPR025487	DUF4379	546	601
IPR025487	DUF4379	475	530
IPR025487	DUF4379	306	376

External Links

No external refs found!