AT1G72210

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000509 (Archaeplastida) Phylogenetic Tree(s): OG0000509_tree ,
OG_05_0000283 (LandPlants) Phylogenetic Tree(s): OG_05_0000283_tree ,
OG_06_0000646 (SeedPlants) Phylogenetic Tree(s): OG_06_0000646_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G72210
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01021074001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
LOC_Os02g46560.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os10g23050.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Solyc12g087850.3.1	No alias	transcription factor (bHLH)	0.01	Archaeplastida
Zm00001e009989_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e023271_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e024824_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e041403_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Neighborhood
MF	GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity	IEP	Neighborhood
CC	GO:0000419	RNA polymerase V complex	IEP	Neighborhood
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Neighborhood
CC	GO:0000815	ESCRT III complex	IEP	Neighborhood
MF	GO:0003863	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	IEP	Neighborhood
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Neighborhood
MF	GO:0003872	6-phosphofructokinase activity	IEP	Neighborhood
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Neighborhood
MF	GO:0004360	glutamine-fructose-6-phosphate transaminase (isomerizing) activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
CC	GO:0005673	transcription factor TFIIE complex	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005945	6-phosphofructokinase complex	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0006041	glucosamine metabolic process	IEP	Neighborhood
BP	GO:0006042	glucosamine biosynthetic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006304	DNA modification	IEP	Neighborhood
BP	GO:0006305	DNA alkylation	IEP	Neighborhood
BP	GO:0006306	DNA methylation	IEP	Neighborhood
BP	GO:0006465	signal peptide processing	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0007135	meiosis II	IEP	Neighborhood
BP	GO:0007140	male meiotic nuclear division	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008443	phosphofructokinase activity	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0008649	rRNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008793	aromatic-amino-acid:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009408	response to heat	IEP	Neighborhood
BP	GO:0009616	virus induced gene silencing	IEP	Neighborhood
BP	GO:0009641	shade avoidance	IEP	Neighborhood
BP	GO:0009648	photoperiodism	IEP	Neighborhood
BP	GO:0009683	indoleacetic acid metabolic process	IEP	Neighborhood
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009756	carbohydrate mediated signaling	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009851	auxin biosynthetic process	IEP	Neighborhood
BP	GO:0009870	defense response signaling pathway, resistance gene-dependent	IEP	Neighborhood
BP	GO:0009896	positive regulation of catabolic process	IEP	Neighborhood
BP	GO:0009908	flower development	IEP	Neighborhood
BP	GO:0009933	meristem structural organization	IEP	Neighborhood
BP	GO:0010050	vegetative phase change	IEP	Neighborhood
BP	GO:0010078	maintenance of root meristem identity	IEP	Neighborhood
BP	GO:0010162	seed dormancy process	IEP	Neighborhood
BP	GO:0010182	sugar mediated signaling pathway	IEP	Neighborhood
BP	GO:0010204	defense response signaling pathway, resistance gene-independent	IEP	Neighborhood
MF	GO:0010326	methionine-oxo-acid transaminase activity	IEP	Neighborhood
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0015939	pantothenate metabolic process	IEP	Neighborhood
BP	GO:0015940	pantothenate biosynthetic process	IEP	Neighborhood
BP	GO:0016137	glycoside metabolic process	IEP	Neighborhood
BP	GO:0016139	glycoside catabolic process	IEP	Neighborhood
MF	GO:0016433	rRNA (adenine) methyltransferase activity	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
BP	GO:0016572	histone phosphorylation	IEP	Neighborhood
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016832	aldehyde-lyase activity	IEP	Neighborhood
MF	GO:0019104	DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
BP	GO:0019915	lipid storage	IEP	Neighborhood
BP	GO:0022611	dormancy process	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034754	cellular hormone metabolic process	IEP	Neighborhood
BP	GO:0035821	modification of morphology or physiology of other organism	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
BP	GO:0042176	regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042446	hormone biosynthetic process	IEP	Neighborhood
BP	GO:0044003	modification by symbiont of host morphology or physiology	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044419	interspecies interaction between organisms	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
BP	GO:0044728	DNA methylation or demethylation	IEP	Neighborhood
BP	GO:0045732	positive regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0046349	amino sugar biosynthetic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046593	mandelonitrile lyase activity	IEP	Neighborhood
MF	GO:0047312	L-phenylalanine:pyruvate aminotransferase activity	IEP	Neighborhood
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Neighborhood
BP	GO:0048467	gynoecium development	IEP	Neighborhood
BP	GO:0048532	anatomical structure arrangement	IEP	Neighborhood
BP	GO:0048571	long-day photoperiodism	IEP	Neighborhood
BP	GO:0048573	photoperiodism, flowering	IEP	Neighborhood
BP	GO:0048574	long-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048825	cotyledon development	IEP	Neighborhood
MF	GO:0050048	L-leucine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
BP	GO:0050826	response to freezing	IEP	Neighborhood
BP	GO:0051188	cofactor biosynthetic process	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051301	cell division	IEP	Neighborhood
BP	GO:0051445	regulation of meiotic cell cycle	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051701	interaction with host	IEP	Neighborhood
BP	GO:0051817	modification of morphology or physiology of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052018	modulation by symbiont of RNA levels in host	IEP	Neighborhood
BP	GO:0052249	modulation of RNA levels in other organism involved in symbiotic interaction	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0061983	meiosis II cell cycle process	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	Neighborhood
MF	GO:0070546	L-phenylalanine aminotransferase activity	IEP	Neighborhood
MF	GO:0070547	L-tyrosine aminotransferase activity	IEP	Neighborhood
MF	GO:0070548	L-glutamine aminotransferase activity	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	Neighborhood
MF	GO:0080098	L-tyrosine:pyruvate aminotransferase activity	IEP	Neighborhood
MF	GO:0080099	L-methionine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
MF	GO:0080100	L-glutamine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
MF	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0090567	reproductive shoot system development	IEP	Neighborhood
BP	GO:0098586	cellular response to virus	IEP	Neighborhood
BP	GO:0140013	meiotic nuclear division	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901073	glucosamine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	123	174

External Links

No external refs found!

AT1G72210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation