AT1G72220

Description : RING/U-box superfamily protein

Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0001298 (SeedPlants) Phylogenetic Tree(s): OG_06_0001298_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G72220
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00070720	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00152p00054630	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.08	Archaeplastida
AT1G53820	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT1G63840	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT2G17730	NIP2	NEP-interacting protein 2	0.03	Archaeplastida
AT3G61460	BRH1	brassinosteroid-responsive RING-H2	0.03	Archaeplastida
AT3G61550	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT4G35840	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT4G40070	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT5G06490	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G07040	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G42200	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Cpa\|evm.model.tig00020943.22	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Cre01.g009101	No alias	No description available	0.02	Archaeplastida
GSVIVT01009096001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.11	Archaeplastida
GSVIVT01012019001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01012022001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01019592001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01026703001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01027769001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.11	Archaeplastida
GSVIVT01032684001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_03946	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_32878	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_36232	No alias	IDF1 iron uptake IRT1-ubiquitin ligase	0.03	Archaeplastida
Gb_41385	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os01g16120.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os02g46600.1	No alias	RING-H2-class E3 ligase	0.07	Archaeplastida
LOC_Os02g50930.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g54830.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os02g57460.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os03g44636.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os04g16970.1	No alias	no hits & (original description: none)	0.08	Archaeplastida
LOC_Os04g49160.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os06g07100.2	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os06g08820.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os06g11450.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os06g50370.1	No alias	NEP1-interacting protein 1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os07g48680.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os09g37050.1	No alias	NEP1-interacting protein 1 OS=Arabidopsis thaliana...	0.05	Archaeplastida
LOC_Os10g30310.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os10g39450.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os10g42390.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os11g02424.1	No alias	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os12g24530.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10021g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_10429091g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_1115518g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_15116g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_152783g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_159453g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_17390g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_229590g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_2679g0010	No alias	RING-H2-class E3 ligase	0.08	Archaeplastida
MA_308999g0020	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_31736g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_377006g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_391590g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_391931g0010	No alias	RING-H2-class E3 ligase	0.07	Archaeplastida
MA_462422g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_63503g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_80729g0030	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Mp3g00390.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Mp7g06030.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Pp3c14_14600V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c17_13190V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c20_11600V3.1	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
Pp3c20_12240V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c21_17280V3.1	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
Pp3c22_15440V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c22_17730V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c23_10580V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c26_11650V3.1	No alias	TOXICOS EN LEVADURA 2	0.05	Archaeplastida
Pp3c4_30240V3.1	No alias	TOXICOS EN LEVADURA 2	0.03	Archaeplastida
Pp3c5_4170V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Solyc01g006910.4.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc02g087040.1.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc04g054370.1.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc04g074820.3.1	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
Solyc05g010175.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc11g005320.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc12g087860.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc12g094690.1.1	No alias	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e007956_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e008560_P001	No alias	no hits & (original description: none)	0.11	Archaeplastida
Zm00001e009142_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e014286_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e014832_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e015805_P001	No alias	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e017960_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e019779_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e019884_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e022742_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e023585_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e023723_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e023908_P006	No alias	no hits & (original description: none)	0.13	Archaeplastida
Zm00001e026193_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e026906_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e031105_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e036289_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004565	beta-galactosidase activity	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0007015	actin filament organization	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	Neighborhood
CC	GO:0010008	endosome membrane	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010090	trichome morphogenesis	IEP	Neighborhood
BP	GO:0010154	fruit development	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010638	positive regulation of organelle organization	IEP	Neighborhood
CC	GO:0012505	endomembrane system	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015925	galactosidase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
BP	GO:0030832	regulation of actin filament length	IEP	Neighborhood
BP	GO:0030833	regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0031334	positive regulation of protein complex assembly	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
BP	GO:0032271	regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032273	positive regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Neighborhood
BP	GO:0032970	regulation of actin filament-based process	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0033043	regulation of organelle organization	IEP	Neighborhood
MF	GO:0042285	xylosyltransferase activity	IEP	Neighborhood
MF	GO:0042409	caffeoyl-CoA O-methyltransferase activity	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0043254	regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
BP	GO:0045010	actin nucleation	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0048363	mucilage pectin metabolic process	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048513	animal organ development	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051130	positive regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0055062	phosphate ion homeostasis	IEP	Neighborhood
BP	GO:0055081	anion homeostasis	IEP	Neighborhood
BP	GO:0055083	monovalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072505	divalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0072506	trivalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0080001	mucilage extrusion from seed coat	IEP	Neighborhood
MF	GO:0080116	glucuronoxylan glucuronosyltransferase activity	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:0097435	supramolecular fiber organization	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
BP	GO:0110053	regulation of actin filament organization	IEP	Neighborhood
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	176	219

External Links

No external refs found!

AT1G72220

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation