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  5. Cpa|evm.model.tig00000691.35

Cpa|evm.model.tig00000691.35


Description : Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000691.35
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.02 Archaeplastida
AMTR_s00111p00031560 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AT5G18620 CHR17 chromatin remodeling factor17 0.02 Archaeplastida
AT5G19310 No alias Homeotic gene regulator 0.02 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10436824g0010 No alias No annotation 0.01 Archaeplastida
MA_10437250g0010 No alias Probable helicase CHR10 OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.01 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.01 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000330 SNF2_N 262 292
IPR001650 Helicase_C 534 658
IPR000330 SNF2_N 325 484
No external refs found!