1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000711.41

Cpa|evm.model.tig00000711.41


Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-C/SMC4 component


Gene families : OG0003989 (Archaeplastida) Phylogenetic Tree(s): OG0003989_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000711.41
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00079920 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.04 Archaeplastida
AT5G48600 ATCAP-C, ATSMC4,... structural maintenance of chromosome 3 0.03 Archaeplastida
Cre12.g493400 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 Archaeplastida
GSVIVT01011408001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.07 Archaeplastida
Gb_03310 No alias component CAP-C/SMC4 of condensin I/II complex 0.09 Archaeplastida
LOC_Os05g41750.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.07 Archaeplastida
MA_10325649g0010 No alias Structural maintenance of chromosomes protein 4... 0.01 Archaeplastida
MA_10432810g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_317249g0010 No alias component CAP-C/SMC4 of condensin I/II complex 0.07 Archaeplastida
MA_7369647g0010 No alias Structural maintenance of chromosomes protein 4... 0.04 Archaeplastida
MA_82161g0010 No alias Structural maintenance of chromosomes protein 4... 0.03 Archaeplastida
Mp5g06430.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.06 Archaeplastida
Pp3c18_16050V3.1 No alias structural maintenance of chromosome 3 0.05 Archaeplastida
Solyc02g087980.3.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 14 1219
IPR010935 SMC_hinge 556 603
No external refs found!