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  5. Cpa|evm.model.tig00000718.71

Cpa|evm.model.tig00000718.71


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).snRNP40/U5-40kDa snRNP component


Gene families : OG0006290 (Archaeplastida) Phylogenetic Tree(s): OG0006290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000718.71
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00161070 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
Cre06.g255400 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
GSVIVT01038180001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
MA_10427747g0010 No alias protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.01 Archaeplastida
Mp3g19750.1 No alias protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.02 Archaeplastida
Pp3c5_3050V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Solyc03g059100.3.1 No alias protein factor U5-40kDa/snRNP40 of U5 small nuclear... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 190 227
IPR001680 WD40_repeat 47 82
IPR001680 WD40_repeat 153 185
IPR001680 WD40_repeat 237 276
IPR001680 WD40_repeat 91 125
No external refs found!