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  5. Cpa|evm.model.tig00000767.19

Cpa|evm.model.tig00000767.19


Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component


Gene families : OG0003850 (Archaeplastida) Phylogenetic Tree(s): OG0003850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000767.19
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00133350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.04 Archaeplastida
AT1G02080 No alias transcription regulators 0.04 Archaeplastida
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 Archaeplastida
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 Archaeplastida
LOC_Os10g40780.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 Archaeplastida
MA_42843g0010 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.06 Archaeplastida
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 Archaeplastida
Pp3c5_6540V3.1 No alias transcription regulators 0.01 Archaeplastida
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 Archaeplastida
Solyc01g090780.3.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 Archaeplastida
Zm00001e039114_P001 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR024557 CCR4-Not_Not1su_DUF3819 1292 1442
IPR007196 CCR4-Not_Not1_C 1880 2042
IPR007196 CCR4-Not_Not1_C 2184 2240
IPR032193 CNOT1_TTP_bind 636 774
IPR032191 CNOT1_CAF1_bind 968 1188
IPR032194 CNOT1_HEAT 460 596
No external refs found!