Cpa|evm.model.tig00000842.12

Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3c component

Gene families : OG0002648 (Archaeplastida) Phylogenetic Tree(s): OG0002648_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000842.12
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00256050	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation...	0.06	Archaeplastida
AT3G56150	EIF3C, EIF3C-1,...	eukaryotic translation initiation factor 3C	0.05	Archaeplastida
Cre04.g217550	No alias	Protein biosynthesis.translation...	0.14	Archaeplastida
GSVIVT01033425001	No alias	Protein biosynthesis.translation...	0.02	Archaeplastida
LOC_Os07g03230.2	No alias	component eIF3c of eIF3 mRNA-to-PIC binding complex	0.08	Archaeplastida
MA_4671g0010	No alias	component eIF3c of eIF3 mRNA-to-PIC binding complex	0.05	Archaeplastida
MA_4699g0010	No alias	component eIF3c of eIF3 mRNA-to-PIC binding complex	0.01	Archaeplastida
Mp6g05320.1	No alias	component eIF3c of eIF3 mRNA-to-PIC binding complex	0.08	Archaeplastida
Pp3c13_10890V3.1	No alias	eukaryotic translation initiation factor 3C	0.05	Archaeplastida
Pp3c26_10770V3.1	No alias	eukaryotic translation initiation factor 3C	0.04	Archaeplastida
Pp3c3_8500V3.1	No alias	eukaryotic translation initiation factor 3C	0.03	Archaeplastida
Pp3c4_24414V3.1	No alias	eukaryotic translation initiation factor 3C	0.02	Archaeplastida
Solyc01g102570.4.1	No alias	Eukaryotic translation initiation factor 3 subunit C...	0.02	Archaeplastida
Zm00001e006832_P001	No alias	component eIF3c of eIF3 mRNA-to-PIC binding complex	0.06	Archaeplastida
Zm00001e006836_P003	No alias	no hits & (original description: none)	0.09	Archaeplastida
Zm00001e007319_P001	No alias	component eIF3c of eIF3 mRNA-to-PIC binding complex	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEA	Interproscan
BP	GO:0006413	translational initiation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0031369	translation initiation factor binding	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000717	PCI_dom	673	783
IPR008905	EIF3C_N_dom	38	664

External Links

No external refs found!