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  5. Cpa|evm.model.tig00000865.28

Cpa|evm.model.tig00000865.28


Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000865.28
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
AMTR_s00077p00041680 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH12... 0.02 Archaeplastida
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.03 Archaeplastida
Cre17.g744147 No alias RNA processing.RNA splicing.spliceosome... 0.07 Archaeplastida
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
GSVIVT01010769001 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
Gb_27895 No alias RNA helicase (Brr2) 0.02 Archaeplastida
LOC_Os02g01740.1 No alias RNA helicase (Brr2) 0.03 Archaeplastida
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
MA_81219g0020 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
MA_81219g0030 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 Archaeplastida
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 Archaeplastida
Mp1g06890.1 No alias RNA helicase (Brr2) 0.06 Archaeplastida
Mp7g00250.1 No alias RNA helicase (Brr2) 0.02 Archaeplastida
Pp3c1_35880V3.1 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.04 Archaeplastida
Smo144158 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
Solyc06g082100.4.1 No alias RNA helicase (Brr2) 0.02 Archaeplastida
Zm00001e035676_P001 No alias RNA helicase (Brr2) 0.04 Archaeplastida
Zm00001e038727_P001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 146 238
IPR011545 DEAD/DEAH_box_helicase_dom 2 107
IPR011545 DEAD/DEAH_box_helicase_dom 657 780
IPR004179 Sec63-dom 332 630
No external refs found!