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  5. Cpa|evm.model.tig00001073.20

Cpa|evm.model.tig00001073.20


Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component


Gene families : OG0004202 (Archaeplastida) Phylogenetic Tree(s): OG0004202_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001073.20
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.08 Archaeplastida
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 Archaeplastida
Cre12.g525200 No alias RNA processing.RNA modification.rRNA/tRNA... 0.1 Archaeplastida
GSVIVT01008506001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.07 Archaeplastida
Gb_05243 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Archaeplastida
LOC_Os03g22880.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.01 Archaeplastida
Mp2g23840.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.09 Archaeplastida
Pp3c16_5220V3.1 No alias homolog of nucleolar protein NOP56 0.03 Archaeplastida
Smo167367 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
Solyc01g100570.4.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Archaeplastida
Zm00001e001676_P001 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 Archaeplastida
Zm00001e038196_P002 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012974 NOP5_N 4 69
IPR002687 Nop_dom 177 410
No external refs found!