Cpa|evm.model.tig00001339.22

Description : RNA processing.RNA quality control Exon Junction complex (EJC).core components.eIF4A3 helicase component

Gene families : OG0000822 (Archaeplastida) Phylogenetic Tree(s): OG0000822_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00001339.22
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
AT1G51380	No alias	DEA(D/H)-box RNA helicase family protein	0.01	Archaeplastida
AT1G72730	No alias	DEA(D/H)-box RNA helicase family protein	0.01	Archaeplastida
LOC_Os01g45190.1	No alias	helicase component eIF4A3 of RNA quality control Exon...	0.01	Archaeplastida
LOC_Os03g36930.1	No alias	helicase component eIF4A3 of RNA quality control Exon...	0.01	Archaeplastida
Mp2g02760.1	No alias	mRNA unwinding factor (eIF4A)	0.01	Archaeplastida
Pp3c6_1080V3.1	No alias	eukaryotic translation initiation factor 4A1	0.01	Archaeplastida
Pp3s93_30V3.1	No alias	eukaryotic translation initiation factor 4A1	0.01	Archaeplastida
Zm00001e016284_P001	No alias	helicase component eIF4A3 of RNA quality control Exon...	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	245	353
IPR011545	DEAD/DEAH_box_helicase_dom	54	203

External Links

No external refs found!