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  5. AT1G76860

AT1G76860


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0007001 (Archaeplastida) Phylogenetic Tree(s): OG0007001_tree ,
OG_05_0007735 (LandPlants) Phylogenetic Tree(s): OG_05_0007735_tree ,
OG_06_0008806 (SeedPlants) Phylogenetic Tree(s): OG_06_0008806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G76860
Cluster HCCA: Cluster_407

Target Alias Description ECC score Gene Family Method Actions
Cre16.g662300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.07 Archaeplastida
Gb_30400 No alias component LSm3 of U6-associated LSm accessory... 0.02 Archaeplastida
LOC_Os01g64690.1 No alias component LSm3 of U6-associated LSm accessory... 0.04 Archaeplastida
MA_545800g0010 No alias component LSm3 of U6-associated LSm accessory... 0.02 Archaeplastida
Mp8g11310.1 No alias component LSm3 of U6-associated LSm accessory... 0.05 Archaeplastida
Smo107803 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Zm00001e019167_P001 No alias component LSm3 of U6-associated LSm accessory... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 small nucleolar ribonucleoprotein complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
MF GO:0031386 protein tag IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 16 92
No external refs found!