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  5. AT1G77340

AT1G77340


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0003504 (Archaeplastida) Phylogenetic Tree(s): OG0003504_tree ,
OG_05_0002667 (LandPlants) Phylogenetic Tree(s): OG_05_0002667_tree ,
OG_06_0001694 (SeedPlants) Phylogenetic Tree(s): OG_06_0001694_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G77340
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00197790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004407 histone deacetylase activity IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0019213 deacetylase activity IEP Neighborhood
BP GO:0031540 regulation of anthocyanin biosynthetic process IEP Neighborhood
MF GO:0033558 protein deacetylase activity IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 297 342
IPR002885 Pentatricopeptide_repeat 153 202
IPR002885 Pentatricopeptide_repeat 224 271
IPR002885 Pentatricopeptide_repeat 359 391
IPR002885 Pentatricopeptide_repeat 122 148
No external refs found!