AT1G78260


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000639 (Archaeplastida) Phylogenetic Tree(s): OG0000639_tree ,
OG_05_0000548 (LandPlants) Phylogenetic Tree(s): OG_05_0000548_tree ,
OG_06_0000334 (SeedPlants) Phylogenetic Tree(s): OG_06_0000334_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G78260
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037134001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_30439 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.07 Archaeplastida
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 Archaeplastida
LOC_Os03g17760.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os06g11730.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.08 Archaeplastida
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 Archaeplastida
Mp8g04430.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.08 Archaeplastida
Solyc04g049920.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.07 Archaeplastida
Solyc04g074310.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.1 Archaeplastida
Zm00001e023856_P001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e030837_P006 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
CC GO:0000322 storage vacuole IEP Neighborhood
CC GO:0000326 protein storage vacuole IEP Neighborhood
BP GO:0000902 cell morphogenesis IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
MF GO:0005200 structural constituent of cytoskeleton IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005275 amine transmembrane transporter activity IEP Neighborhood
MF GO:0005372 water transmembrane transporter activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005819 spindle IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006084 acetyl-CoA metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006469 negative regulation of protein kinase activity IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006637 acyl-CoA metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006732 coenzyme metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006816 calcium ion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0006833 water transport IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008154 actin polymerization or depolymerization IEP Neighborhood
CC GO:0008180 COP9 signalosome IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009267 cellular response to starvation IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
CC GO:0009505 plant-type cell wall IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009734 auxin-activated signaling pathway IEP Neighborhood
BP GO:0009825 multidimensional cell growth IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010106 cellular response to iron ion starvation IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010411 xyloglucan metabolic process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
BP GO:0010948 negative regulation of cell cycle process IEP Neighborhood
MF GO:0015101 organic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015200 methylammonium transmembrane transporter activity IEP Neighborhood
MF GO:0015204 urea transmembrane transporter activity IEP Neighborhood
MF GO:0015250 water channel activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0015629 actin cytoskeleton IEP Neighborhood
BP GO:0015840 urea transport IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
BP GO:0016143 S-glycoside metabolic process IEP Neighborhood
BP GO:0016144 S-glycoside biosynthetic process IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
CC GO:0019005 SCF ubiquitin ligase complex IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019755 one-carbon compound transport IEP Neighborhood
BP GO:0019757 glycosinolate metabolic process IEP Neighborhood
BP GO:0019758 glycosinolate biosynthetic process IEP Neighborhood
BP GO:0019760 glucosinolate metabolic process IEP Neighborhood
BP GO:0019761 glucosinolate biosynthetic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0030104 water homeostasis IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
BP GO:0033673 negative regulation of kinase activity IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0035383 thioester metabolic process IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042044 fluid transport IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
BP GO:0042446 hormone biosynthetic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0042807 central vacuole IEP Neighborhood
BP GO:0042891 antibiotic transport IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043473 pigmentation IEP Neighborhood
BP GO:0043476 pigment accumulation IEP Neighborhood
BP GO:0043478 pigment accumulation in response to UV light IEP Neighborhood
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP Neighborhood
BP GO:0043480 pigment accumulation in tissues IEP Neighborhood
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
CC GO:0043674 columella IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044462 external encapsulating structure part IEP Neighborhood
CC GO:0045298 tubulin complex IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0045839 negative regulation of mitotic nuclear division IEP Neighborhood
BP GO:0045930 negative regulation of mitotic cell cycle IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
CC GO:0046658 anchored component of plasma membrane IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048767 root hair elongation IEP Neighborhood
BP GO:0048768 root hair cell tip growth IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051181 cofactor transport IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051348 negative regulation of transferase activity IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051784 negative regulation of nuclear division IEP Neighborhood
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP Neighborhood
BP GO:0052546 cell wall pectin metabolic process IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071258 cellular response to gravity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0080170 hydrogen peroxide transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1901659 glycosyl compound biosynthetic process IEP Neighborhood
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Neighborhood
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 19 76
No external refs found!