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  5. Cpa|evm.model.tig00020610.38

Cpa|evm.model.tig00020610.38


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL11 component


Gene families : OG0001738 (Archaeplastida) Phylogenetic Tree(s): OG0001738_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020610.38
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00200160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
AMTR_s00025p00203150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AT2G42740 RPL16A ribosomal protein large subunit 16A 0.07 Archaeplastida
AT3G58700 No alias Ribosomal L5P family protein 0.13 Archaeplastida
AT4G18730 RPL16B ribosomal protein L16B 0.3 Archaeplastida
AT5G45775 No alias Ribosomal L5P family protein 0.27 Archaeplastida
Cre01.g027000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 Archaeplastida
GSVIVT01020743001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01021244001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Gb_08546 No alias component RPL11 of LSU proteome component 0.11 Archaeplastida
LOC_Os01g10820.1 No alias component RPL11 of LSU proteome component 0.16 Archaeplastida
LOC_Os02g14059.1 No alias component RPL11 of LSU proteome component 0.06 Archaeplastida
LOC_Os05g11710.1 No alias component RPL11 of LSU proteome component 0.21 Archaeplastida
LOC_Os06g35730.1 No alias component RPL11 of LSU proteome component 0.22 Archaeplastida
MA_57785g0010 No alias 60S ribosomal protein L11-1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_74060g0010 No alias component RPL11 of LSU proteome component 0.11 Archaeplastida
MA_86694g0010 No alias component RPL11 of LSU proteome component 0.24 Archaeplastida
Mp2g24740.1 No alias component RPL11 of LSU proteome component 0.26 Archaeplastida
Mp6g18870.1 No alias component RPL11 of LSU proteome component 0.04 Archaeplastida
Pp3c11_8070V3.1 No alias ribosomal protein L16B 0.17 Archaeplastida
Pp3c1_7710V3.1 No alias ribosomal protein L16B 0.22 Archaeplastida
Pp3c27_2260V3.1 No alias Ribosomal L5P family protein 0.24 Archaeplastida
Pp3c2_33280V3.1 No alias ribosomal protein L16B 0.09 Archaeplastida
Pp3c5_3870V3.1 No alias Ribosomal L5P family protein 0.16 Archaeplastida
Pp3c7_20160V3.1 No alias ribosomal protein large subunit 16A 0.25 Archaeplastida
Smo444767 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
Solyc02g086240.3.1 No alias component RPL11 of LSU proteome component 0.24 Archaeplastida
Solyc07g055230.4.1 No alias component RPL11 of LSU proteome component 0.2 Archaeplastida
Solyc10g007980.3.1 No alias component RPL11 of LSU proteome component 0.23 Archaeplastida
Solyc12g010930.2.1 No alias component RPL11 of LSU proteome component 0.22 Archaeplastida
Zm00001e014363_P001 No alias no hits & (original description: none) 0.2 Archaeplastida
Zm00001e024913_P001 No alias component RPL11 of LSU proteome component 0.23 Archaeplastida
Zm00001e026886_P003 No alias component RPL11 of LSU proteome component 0.19 Archaeplastida
Zm00001e037255_P001 No alias component RPL11 of LSU proteome component 0.2 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 52 150
No external refs found!