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  5. AT1G79830

AT1G79830 (GC5)


Aliases : GC5

Description : golgin candidate 5


Gene families : OG0003240 (Archaeplastida) Phylogenetic Tree(s): OG0003240_tree ,
OG_05_0004501 (LandPlants) Phylogenetic Tree(s): OG_05_0004501_tree ,
OG_06_0004575 (SeedPlants) Phylogenetic Tree(s): OG_06_0004575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G79830
Cluster HCCA: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000388.17 No alias No description available 0.02 Archaeplastida
Cre03.g187000 No alias Golgin candidate 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre09.g400812 No alias No description available 0.02 Archaeplastida
GSVIVT01038690001 No alias Vesicle trafficking.target membrane tethering.Golgi... 0.03 Archaeplastida
MA_10430555g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_9882g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp8g06100.1 No alias golgin (GC5/TMF) 0.02 Archaeplastida
Pp3c12_5050V3.1 No alias golgin candidate 5 0.03 Archaeplastida
Solyc06g066610.4.1 No alias golgin (GC5/TMF) 0.1 Archaeplastida
Zm00001e026507_P001 No alias golgin (GC5/TMF) 0.07 Archaeplastida
Zm00001e026510_P001 No alias Golgin candidate 5 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e032402_P001 No alias golgin (GC5/TMF) 0.1 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0048193 Golgi vesicle transport RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
BP GO:0000919 cell plate assembly IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0003958 NADPH-hemoprotein reductase activity IEP Neighborhood
MF GO:0004105 choline-phosphate cytidylyltransferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
CC GO:0005802 trans-Golgi network IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006491 N-glycan processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006513 protein monoubiquitination IEP Neighborhood
BP GO:0006656 phosphatidylcholine biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0009100 glycoprotein metabolic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0010048 vernalization response IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010390 histone monoubiquitination IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016262 protein N-acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016574 histone ubiquitination IEP Neighborhood
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
BP GO:0016926 protein desumoylation IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0030276 clathrin binding IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033523 histone H2B ubiquitination IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
MF GO:0043424 protein histidine kinase binding IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046470 phosphatidylcholine metabolic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR022092 TMF_DNA-bd 433 504
IPR022091 TMF_TATA-bd 840 951
No external refs found!