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  5. Cpa|evm.model.tig00020723.108

Cpa|evm.model.tig00020723.108


Description : RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase


Gene families : OG0000933 (Archaeplastida) Phylogenetic Tree(s): OG0000933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020723.108
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Archaeplastida
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
Cre06.g289950 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
Gb_23155 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
LOC_Os02g06500.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.01 Archaeplastida
LOC_Os11g07500.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.06 Archaeplastida
LOC_Os12g18140.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
MA_10426385g0010 No alias DExH-box ATP-dependent RNA helicase DExH10... 0.03 Archaeplastida
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.06 Archaeplastida
Pp3c10_7310V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Archaeplastida
Pp3c14_23340V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.09 Archaeplastida
Smo174598 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Smo403447 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Zm00001e013693_P002 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.01 Archaeplastida
Zm00001e025923_P001 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.01 Archaeplastida
Zm00001e036710_P004 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012961 Ski2_C 858 1023
IPR025696 rRNA_proc-arch_dom 582 842
IPR011545 DEAD/DEAH_box_helicase_dom 140 286
No external refs found!