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  5. Cpa|evm.model.tig00020780.71

Cpa|evm.model.tig00020780.71


No description available


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020780.71
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.01 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.01 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.02 Archaeplastida
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.01 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.01 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.01 Archaeplastida
Gb_06547 No alias linker histone (H1) 0.01 Archaeplastida
Gb_21889 No alias linker histone (H1) 0.02 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.01 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.03 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.02 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.01 Archaeplastida
MA_877599g0010 No alias linker histone (H1) 0.04 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.03 Archaeplastida
Pp3c18_14270V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.05 Archaeplastida
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.03 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.02 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.02 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.01 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.02 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 47 114
No external refs found!