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  5. Cpa|evm.model.tig00020848.66

Cpa|evm.model.tig00020848.66


Description : Probable helicase CHR10 OS=Arabidopsis thaliana


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020848.66
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.02 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.01 Archaeplastida
Cpa|evm.model.tig00000802.67 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01017821001 No alias No description available 0.01 Archaeplastida
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
LOC_Os05g05780.1 No alias chromatin remodeling factor (Iswi) 0.01 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Solyc01g090650.1.1 No alias chromatin remodeling factor (Alc) 0.01 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 369 481
IPR000330 SNF2_N 22 281
No external refs found!