AT2G01740


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0009457 (Archaeplastida) Phylogenetic Tree(s): OG0009457_tree ,
OG_05_0047006 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0041730 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G01740
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
Gb_07336 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_863836g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
BP GO:0000280 nuclear division IEP Neighborhood
BP GO:0000374 Group III intron splicing IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005838 proteasome regulatory particle IEP Neighborhood
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0007006 mitochondrial membrane organization IEP Neighborhood
BP GO:0007007 inner mitochondrial membrane organization IEP Neighborhood
BP GO:0007143 female meiotic nuclear division IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
BP GO:0010018 far-red light signaling pathway IEP Neighborhood
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP Neighborhood
BP GO:0010496 intercellular transport IEP Neighborhood
BP GO:0016233 telomere capping IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016572 histone phosphorylation IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0034046 poly(G) binding IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0042775 mitochondrial ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0042991 obsolete transcription factor import into nucleus IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0045039 protein import into mitochondrial inner membrane IEP Neighborhood
BP GO:0045947 negative regulation of translational initiation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048285 organelle fission IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051568 histone H3-K4 methylation IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0071490 cellular response to far red light IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090057 root radial pattern formation IEP Neighborhood
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
MF GO:1901981 phosphatidylinositol phosphate binding IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 86 115
IPR002885 Pentatricopeptide_repeat 298 330
IPR002885 Pentatricopeptide_repeat 161 210
IPR002885 Pentatricopeptide_repeat 232 278
IPR002885 Pentatricopeptide_repeat 402 450
IPR002885 Pentatricopeptide_repeat 473 518
IPR002885 Pentatricopeptide_repeat 336 385
IPR002885 Pentatricopeptide_repeat 130 157
No external refs found!