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  5. Cpa|evm.model.tig00020903.20

Cpa|evm.model.tig00020903.20


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.HAF/TAF1 component


Gene families : OG0002996 (Archaeplastida) Phylogenetic Tree(s): OG0002996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020903.20
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.atypical kinase... 0.02 Archaeplastida
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.03 Archaeplastida
Cre10.g425501 No alias Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.02 Archaeplastida
GSVIVT01020528001 No alias Protein modification.phosphorylation.atypical kinase... 0.02 Archaeplastida
Gb_10677 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.01 Archaeplastida
LOC_Os06g43790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.03 Archaeplastida
Mp5g22790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.03 Archaeplastida
Pp3c10_350V3.1 No alias HAC13 protein (HAC13) 0.02 Archaeplastida
Pp3c14_1870V3.1 No alias HAC13 protein (HAC13) 0.01 Archaeplastida
Smo409957 No alias Protein modification.phosphorylation.atypical kinase... 0.02 Archaeplastida
Solyc07g006820.4.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.03 Archaeplastida
Zm00001e037464_P001 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001487 Bromodomain 1500 1572
IPR022591 TFIID_sub1_DUF3591 584 1096
No external refs found!