Cpa|evm.model.tig00020912.24

Description : 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0002028 (Archaeplastida) Phylogenetic Tree(s): OG0002028_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020912.24
Cluster	HCCA: Cluster_184

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00228230	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.03	Archaeplastida
AT1G78630	emb1473	Ribosomal protein L13 family protein	0.03	Archaeplastida
Cre06.g264350	No alias	Protein biosynthesis.organelle translation...	0.04	Archaeplastida
Cre09.g405200	No alias	Protein biosynthesis.organelle translation...	0.01	Archaeplastida
GSVIVT01014101001	No alias	Protein biosynthesis.organelle translation...	0.02	Archaeplastida
Gb_28095	No alias	component psRPL13 of large ribosomal subunit proteome	0.04	Archaeplastida
LOC_Os01g54540.1	No alias	component psRPL13 of large ribosomal subunit proteome	0.04	Archaeplastida
MA_10433400g0010	No alias	component psRPL13 of large ribosomal subunit proteome	0.02	Archaeplastida
MA_109054g0010	No alias	component mtRPL13 of large ribosomal subunit proteome	0.02	Archaeplastida
Mp3g07030.1	No alias	component psRPL13 of large ribosomal subunit proteome	0.04	Archaeplastida
Pp3c1_3220V3.1	No alias	Ribosomal protein L13 family protein	0.02	Archaeplastida
Pp3c20_2980V3.1	No alias	Ribosomal protein L13 family protein	0.04	Archaeplastida
Smo7665	No alias	Protein biosynthesis.organelle translation...	0.02	Archaeplastida
Solyc07g062190.4.1	No alias	component psRPL13 of large ribosomal subunit proteome	0.04	Archaeplastida
Solyc12g014390.3.1	No alias	component psRPL13 of large ribosomal subunit proteome	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	72	105
IPR005822	Ribosomal_L13	112	158

External Links

No external refs found!

Cpa|evm.model.tig00020912.24

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation