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  5. Cpa|evm.model.tig00020927.23

Cpa|evm.model.tig00020927.23


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA1 assembly factor


Gene families : OG0005878 (Archaeplastida) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020927.23
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.04 Archaeplastida
Cre03.g196850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
GSVIVT01011022001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 Archaeplastida
Gb_10217 No alias SSU processome assembly factor (SWA1) 0.01 Archaeplastida
MA_10433633g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp4g00830.1 No alias SSU processome assembly factor (SWA1) 0.06 Archaeplastida
Pp3c8_11620V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
Solyc05g010470.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e033137_P001 No alias SSU processome assembly factor (SWA1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR018983 U3_snoRNA-assocProt_15_C 340 477
IPR001680 WD40_repeat 222 260
IPR001680 WD40_repeat 183 217
IPR001680 WD40_repeat 115 176
No external refs found!