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  5. AT2G02960

AT2G02960


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0000506 (LandPlants) Phylogenetic Tree(s): OG_05_0000506_tree ,
OG_06_0001067 (SeedPlants) Phylogenetic Tree(s): OG_06_0001067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G02960
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cre09.g400738 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
LOC_Os02g36740.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
CC GO:0005874 microtubule IEP Neighborhood
CC GO:0005881 cytoplasmic microtubule IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006816 calcium ion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0009749 response to glucose IEP Neighborhood
BP GO:0009750 response to fructose IEP Neighborhood
BP GO:0010106 cellular response to iron ion starvation IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042732 D-xylose metabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
CC GO:0055028 cortical microtubule IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0099080 supramolecular complex IEP Neighborhood
CC GO:0099081 supramolecular polymer IEP Neighborhood
CC GO:0099512 supramolecular fiber IEP Neighborhood
CC GO:0099513 polymeric cytoskeletal fiber IEP Neighborhood
InterPro domains Description Start Stop
IPR022143 DUF3675 94 212
IPR011016 Znf_RING-CH 43 88
No external refs found!