AT1G07910 (ATRNL, AtRLG1, RNL)


Aliases : ATRNL, AtRLG1, RNL

Description : RNAligase


Gene families : OG0004575 (Archaeplastida) Phylogenetic Tree(s): OG0004575_tree ,
OG_05_0004828 (LandPlants) Phylogenetic Tree(s): OG_05_0004828_tree ,
OG_06_0005424 (SeedPlants) Phylogenetic Tree(s): OG_06_0005424_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G07910
Cluster HCCA: Cluster_101


Type GO Term Name Evidence Source
MF GO:0003972 RNA ligase (ATP) activity IGI Interproscan
MF GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity IGI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IDA Interproscan
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation TAS Interproscan
MF GO:0051731 polynucleotide 5'-hydroxyl-kinase activity IGI Interproscan
Type GO Term Name Evidence Source
MF GO:0004364 glutathione transferase activity IEP Neighborhood
MF GO:0004610 phosphoacetylglucosamine mutase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006047 UDP-N-acetylglucosamine metabolic process IEP Neighborhood
BP GO:0006048 UDP-N-acetylglucosamine biosynthetic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0009225 nucleotide-sugar metabolic process IEP Neighborhood
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0010048 vernalization response IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010090 trichome morphogenesis IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0016926 protein desumoylation IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0046349 amino sugar biosynthetic process IEP Neighborhood
BP GO:0050665 hydrogen peroxide biosynthetic process IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1903409 reactive oxygen species biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR015965 tRNA_lig_PDEase 940 1085
No external refs found!