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  5. Cpa|evm.model.tig00021014.10

Cpa|evm.model.tig00021014.10


Description : DNA repair protein RAD5A OS=Arabidopsis thaliana


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021014.10
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00226100 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.04 Archaeplastida
AT5G05130 No alias DNA/RNA helicase protein 0.01 Archaeplastida
Cre01.g046237 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01006339001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Gb_33076 No alias chromatin remodeling factor (Ris1) 0.03 Archaeplastida
LOC_Os01g57110.1 No alias chromatin remodeling factor (Ris1) 0.02 Archaeplastida
LOC_Os07g44800.1 No alias chromatin remodeling factor (Rad5) 0.02 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.04 Archaeplastida
MA_10434222g0010 No alias chromatin remodeling factor (Rad5) 0.01 Archaeplastida
MA_18567g0010 No alias Helicase-like transcription factor CHR27 OS=Arabidopsis... 0.01 Archaeplastida
MA_4534g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.03 Archaeplastida
MA_8870g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c21_12900V3.1 No alias SNF2 domain-containing protein / helicase... 0.02 Archaeplastida
Solyc02g050280.4.1 No alias chromatin remodeling factor (Ris1) 0.01 Archaeplastida
Solyc12g020110.2.1 No alias chromatin remodeling factor (Rad5) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 694 770
IPR000330 SNF2_N 124 428
No external refs found!