Cpa|evm.model.tig00021073.40

Description : RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase

Gene families : OG0001869 (Archaeplastida) Phylogenetic Tree(s): OG0001869_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021073.40
Cluster	HCCA: Cluster_177

Target	Alias	Description	ECC score	Gene Family Method
AT5G14580	No alias	polyribonucleotide nucleotidyltransferase, putative	0.02	Archaeplastida
Gb_20425	No alias	polynucleotide phosphorylase (PNP)	0.02	Archaeplastida
MA_10432723g0020	No alias	polynucleotide phosphorylase (PNP)	0.01	Archaeplastida
MA_10434926g0010	No alias	Polyribonucleotide nucleotidyltransferase 2,...	0.01	Archaeplastida
Solyc02g086600.3.1	No alias	polynucleotide phosphorylase (PNP)	0.03	Archaeplastida
Zm00001e015113_P001	No alias	polynucleotide phosphorylase (PNP)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR015848	PNPase_PH_RNA-bd_bac/org-type	296	356
IPR015847	ExoRNase_PH_dom2	180	243
IPR001247	ExoRNase_PH_dom1	359	492
IPR001247	ExoRNase_PH_dom1	48	176

External Links

No external refs found!