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  5. Cpa|evm.model.tig00021108.27

Cpa|evm.model.tig00021108.27


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0001575 (Archaeplastida) Phylogenetic Tree(s): OG0001575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021108.27
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT3G54560 HTA11 histone H2A 11 0.02 Archaeplastida
GSVIVT01003139001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
LOC_Os03g06670.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os10g28230.1 No alias histone (H2A) 0.06 Archaeplastida
Pp3c12_17610V3.1 No alias histone H2A protein 9 0.02 Archaeplastida
Pp3c4_14220V3.1 No alias histone H2A protein 9 0.04 Archaeplastida
Solyc06g084090.4.1 No alias histone (H2A) 0.02 Archaeplastida
Solyc09g065755.1.1 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e005636_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e012057_P001 No alias histone (H2A) 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 93
IPR032454 Histone_H2A_C 94 123
No external refs found!