Cpa|evm.model.tig00021348.38

Description : DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana

Gene families : OG0003993 (Archaeplastida) Phylogenetic Tree(s): OG0003993_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021348.38
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
AT1G29940	NRPA2	nuclear RNA polymerase A2	0.08	Archaeplastida
Cre07.g322176	No alias	DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana	0.17	Archaeplastida
GSVIVT01036642001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	Archaeplastida
Gb_32298	No alias	subunit 2 of Pol I RNA polymerase	0.02	Archaeplastida
LOC_Os10g35290.1	No alias	subunit 2 of Pol I RNA polymerase	0.06	Archaeplastida
MA_10434720g0010	No alias	DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis...	0.03	Archaeplastida
Mp3g15820.1	No alias	subunit 2 of Pol I RNA polymerase	0.12	Archaeplastida
Pp3c5_14880V3.1	No alias	nuclear RNA polymerase A2	0.1	Archaeplastida
Smo405033	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
Solyc01g086710.4.1	No alias	subunit 2 of Pol I RNA polymerase	0.07	Archaeplastida
Zm00001e004480_P001	No alias	subunit 2 of Pol I RNA polymerase	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007642	RNA_pol_Rpb2_2	176	350
IPR007120	DNA-dir_RNAP_su2_dom	893	961
IPR007120	DNA-dir_RNAP_su2_dom	663	778
IPR007644	RNA_pol_bsu_protrusion	36	381
IPR007645	RNA_pol_Rpb2_3	433	497

External Links

No external refs found!

Cpa|evm.model.tig00021348.38

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation