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  5. Cpa|evm.model.tig00021433.38

Cpa|evm.model.tig00021433.38


Description : 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica


Gene families : OG0002504 (Archaeplastida) Phylogenetic Tree(s): OG0002504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021433.38
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.25 Archaeplastida
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.41 Archaeplastida
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.24 Archaeplastida
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01024668001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.32 Archaeplastida
GSVIVT01032756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Gb_18544 No alias component RPS4 of SSU proteome 0.02 Archaeplastida
Gb_18548 No alias component RPS4 of SSU proteome 0.03 Archaeplastida
LOC_Os01g25610.1 No alias component RPS4 of SSU proteome 0.19 Archaeplastida
LOC_Os02g01560.1 No alias component RPS4 of SSU proteome 0.17 Archaeplastida
LOC_Os05g30530.1 No alias component RPS4 of SSU proteome 0.15 Archaeplastida
MA_127596g0010 No alias component RPS4 of SSU proteome 0.14 Archaeplastida
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.34 Archaeplastida
Pp3c11_3690V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.23 Archaeplastida
Pp3c1_8290V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.33 Archaeplastida
Pp3c25_3730V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.21 Archaeplastida
Pp3c25_3736V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.08 Archaeplastida
Pp3c6_7730V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.09 Archaeplastida
Pp3c7_23800V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.12 Archaeplastida
Smo148442 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Solyc02g070330.4.1 No alias component RPS4 of SSU proteome 0.27 Archaeplastida
Solyc02g070340.3.1 No alias component RPS4 of SSU proteome 0.3 Archaeplastida
Zm00001e006307_P001 No alias component RPS4 of SSU proteome 0.29 Archaeplastida
Zm00001e011676_P001 No alias component RPS4 of SSU proteome 0.29 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 90 141
IPR005824 KOW 151 183
IPR002942 S4_RNA-bd 47 89
IPR032277 40S_S4_C 184 230
IPR013843 Ribosomal_S4e_N 3 39
No external refs found!