1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00021501.12

Cpa|evm.model.tig00021501.12


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component


Gene families : OG0003158 (Archaeplastida) Phylogenetic Tree(s): OG0003158_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021501.12
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT4G16200 No alias SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 0.01 Archaeplastida
Cre06.g307450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 Archaeplastida
GSVIVT01012061001 No alias No description available 0.01 Archaeplastida
Mp6g07670.1 No alias component SF3A1 of splicing factor 3A complex 0.02 Archaeplastida
Pp3c23_15260V3.1 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.02 Archaeplastida
Solyc02g081960.3.1 No alias component SF3A1 of splicing factor 3A complex 0.03 Archaeplastida
Solyc04g005690.4.1 No alias component SF3A1 of splicing factor 3A complex 0.02 Archaeplastida
Zm00001e017307_P001 No alias component SF3A1 of splicing factor 3A complex 0.01 Archaeplastida
Zm00001e025538_P001 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000061 Surp 147 197
IPR000061 Surp 30 81
IPR000626 Ubiquitin_dom 580 642
IPR022030 SF3A1 215 408
No external refs found!