Cpa|evm.model.tig00021589.29


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021589.29
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00124770 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cre24.g755347 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01021163001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_13411 No alias RNA helicase (Prp16) 0.01 Archaeplastida
LOC_Os03g19960.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.01 Archaeplastida
Zm00001e003642_P002 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002710 Dilute_dom 454 559
IPR001650 Helicase_C 1540 1670
IPR004182 GRAM 80 183
IPR003029 S1_domain 1064 1128
IPR007502 Helicase-assoc_dom 1732 1759
No external refs found!