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  5. Cpa|evm.model.tig00022075.50

Cpa|evm.model.tig00022075.50


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL40 component


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022075.50
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.02 Archaeplastida
AMTR_s00095p00146440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
AT1G23410 No alias Ribosomal protein S27a / Ubiquitin family protein 0.03 Archaeplastida
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.17 Archaeplastida
AT2G47110 UBQ6 ubiquitin 6 0.2 Archaeplastida
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.18 Archaeplastida
AT3G62250 UBQ5 ubiquitin 5 0.18 Archaeplastida
AT5G20620 UBQ4 ubiquitin 4 0.01 Archaeplastida
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Cre06.g273600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
GSVIVT01012906001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01022543001 No alias Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum 0.04 Archaeplastida
GSVIVT01028198001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
Gb_01257 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
Gb_15027 No alias component RPS27a of SSU proteome 0.13 Archaeplastida
Gb_40288 No alias component RPS27a of SSU proteome 0.09 Archaeplastida
Gb_41257 No alias component RPL40 of LSU proteome component 0.14 Archaeplastida
LOC_Os01g22490.1 No alias component RPS27a of SSU proteome 0.07 Archaeplastida
LOC_Os03g13170.1 No alias component RPL40 of LSU proteome component 0.09 Archaeplastida
LOC_Os05g06770.1 No alias component RPS27a of SSU proteome 0.05 Archaeplastida
LOC_Os06g44080.1 No alias ubiquitin-fold protein (RUB) 0.02 Archaeplastida
LOC_Os09g39500.1 No alias component RPL40 of LSU proteome component 0.08 Archaeplastida
MA_10435699g0020 No alias component RPS27a of SSU proteome 0.04 Archaeplastida
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.11 Archaeplastida
MA_529552g0010 No alias component RPS27a of SSU proteome 0.11 Archaeplastida
MA_6985771g0010 No alias Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare... 0.01 Archaeplastida
MA_9129425g0010 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
MA_94077g0010 No alias ubiquitin-fold protein (UBQ) 0.01 Archaeplastida
Mp4g02760.1 No alias Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare... 0.01 Archaeplastida
Mp7g12490.1 No alias component RPL40 of LSU proteome component 0.02 Archaeplastida
Mp7g12760.1 No alias component RPS27a of SSU proteome 0.03 Archaeplastida
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.2 Archaeplastida
Pp3c10_25270V3.1 No alias ubiquitin extension protein 1 0.15 Archaeplastida
Pp3c12_5640V3.1 No alias ubiquitin 6 0.15 Archaeplastida
Pp3c12_5760V3.1 No alias ubiquitin 6 0.14 Archaeplastida
Pp3c20_23170V3.1 No alias ubiquitin extension protein 1 0.21 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.11 Archaeplastida
Pp3c3_25480V3.1 No alias ubiquitin extension protein 1 0.14 Archaeplastida
Pp3c4_11930V3.1 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.08 Archaeplastida
Pp3c4_19000V3.1 No alias ubiquitin 6 0.22 Archaeplastida
Pp3c8_14230V3.1 No alias ubiquitin 6 0.14 Archaeplastida
Smo111605 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Smo162003 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Smo93613 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Solyc01g068045.1.1 No alias component RPS27a of SSU proteome 0.17 Archaeplastida
Solyc01g096290.4.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc03g082570.4.1 No alias component RPL40 of LSU proteome component 0.16 Archaeplastida
Solyc08g008590.4.1 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Solyc08g083120.3.1 No alias component RPL40 of LSU proteome component 0.19 Archaeplastida
Solyc12g098940.2.1 No alias component RPS27a of SSU proteome 0.15 Archaeplastida
Solyc12g099025.1.1 No alias component RPS27a of SSU proteome 0.1 Archaeplastida
Zm00001e000962_P001 No alias component RPL40 of LSU proteome component 0.08 Archaeplastida
Zm00001e000965_P001 No alias component RPL40 of LSU proteome component 0.01 Archaeplastida
Zm00001e009474_P001 No alias component RPL40 of LSU proteome component 0.11 Archaeplastida
Zm00001e026237_P001 No alias component RPS27a of SSU proteome 0.15 Archaeplastida
Zm00001e028916_P001 No alias component RPS27a of SSU proteome 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 108 157
IPR000626 Ubiquitin_dom 32 104
No external refs found!