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  5. Cpa|evm.model.tig00022075.61

Cpa|evm.model.tig00022075.61


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor complex.small subunit


Gene families : OG0001875 (Archaeplastida) Phylogenetic Tree(s): OG0001875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022075.61
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00118880 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
AT1G27650 ATU2AF35A U2 snRNP auxiliary factor small subunit, putative 0.01 Archaeplastida
Gb_08405 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.01 Archaeplastida
LOC_Os01g47750.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.01 Archaeplastida
LOC_Os05g48960.4 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
MA_17429g0020 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.01 Archaeplastida
MA_1746231g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_77509g0010 No alias Splicing factor U2af small subunit B OS=Arabidopsis... 0.02 Archaeplastida
Mp6g21420.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Solyc10g083640.2.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Solyc11g066830.2.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Zm00001e011429_P001 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Zm00001e026533_P001 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Zm00001e032430_P001 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 83 139
IPR000571 Znf_CCCH 15 38
IPR000571 Znf_CCCH 151 173
No external refs found!