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Gb_00025


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0006420 (SeedPlants) Phylogenetic Tree(s): OG_06_0006420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_00025
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AT1G26770 ATEXPA10,... expansin A10 0.02 Archaeplastida
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.02 Archaeplastida
Gb_01504 No alias alpha-class expansin 0.04 Archaeplastida
Gb_07436 No alias Expansin-A4 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Gb_27617 No alias Putative expansin-A17 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.02 Archaeplastida
MA_200461g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp1g24230.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp1g26350.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09760.1 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e038997_P001 No alias alpha-class expansin 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 79 164
IPR007117 Expansin_CBD 177 254
No external refs found!