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  5. Gb_00344

Gb_00344


Description : protein factor PRPF8/SUS2 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0004586 (Archaeplastida) Phylogenetic Tree(s): OG0004586_tree ,
OG_05_0005265 (LandPlants) Phylogenetic Tree(s): OG_05_0005265_tree ,
OG_06_0007720 (SeedPlants) Phylogenetic Tree(s): OG_06_0007720_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_00344
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.09 Archaeplastida
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.18 Archaeplastida
Cpa|evm.model.tig00000093.137 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
Cre01.g016050 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
GSVIVT01017346001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.1 Archaeplastida
LOC_Os05g07050.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.12 Archaeplastida
LOC_Os06g07080.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.1 Archaeplastida
MA_7388g0020 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.17 Archaeplastida
Mp1g12380.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.08 Archaeplastida
Pp3c24_20910V3.1 No alias Pre-mRNA-processing-splicing factor 0.1 Archaeplastida
Pp3c8_25090V3.1 No alias Pre-mRNA-processing-splicing factor 0.05 Archaeplastida
Smo173603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.12 Archaeplastida
Solyc07g008880.3.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.17 Archaeplastida
Zm00001e030094_P003 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.07 Archaeplastida
Zm00001e036397_P001 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.15 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR012984 PROCT 2228 2348
IPR012591 PRO8NT 72 223
IPR012592 PROCN 411 816
IPR019580 Prp8_U6-snRNA-bd 1458 1616
IPR021983 PRP8_domainIV 1776 2005
IPR019581 Prp8_U5-snRNA-bd 1226 1359
IPR000555 JAMM/MPN+_dom 2117 2215
IPR019582 RRM_spliceosomal_PrP8 1001 1091
No external refs found!