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Gb_00365


Description : TAC17 cofactor of plastid-encoded RNA polymerase


Gene families : OG0000971 (Archaeplastida) Phylogenetic Tree(s): OG0000971_tree ,
OG_05_0003359 (LandPlants) Phylogenetic Tree(s): OG_05_0003359_tree ,
OG_06_0003442 (SeedPlants) Phylogenetic Tree(s): OG_06_0003442_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_00365
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 Archaeplastida
AT1G26520 No alias Cobalamin biosynthesis CobW-like protein 0.03 Archaeplastida
AT1G80480 PTAC17 plastid transcriptionally active 17 0.04 Archaeplastida
GSVIVT01017471001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
LOC_Os02g55630.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
LOC_Os04g51100.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
MA_10426462g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_13982g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_174309g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c11_23140V3.1 No alias plastid transcriptionally active 17 0.03 Archaeplastida
Smo405512 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 345 439
IPR003495 CobW/HypB/UreG_dom 91 276
No external refs found!