Gb_00777

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 162.0)

Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree ,
OG_06_0000049 (SeedPlants) Phylogenetic Tree(s): OG_06_0000049_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_00777
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g183950	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_00282	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.03	Archaeplastida
Gb_02021	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.07	Archaeplastida
Gb_04521	No alias	Uncharacterized mitochondrial protein AtMg00820...	0.03	Archaeplastida
Gb_04681	No alias	Uncharacterized mitochondrial protein AtMg00820...	0.04	Archaeplastida
Gb_04745	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.03	Archaeplastida
Gb_05496	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_05895	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.04	Archaeplastida
Gb_06017	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.04	Archaeplastida
Gb_06309	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.05	Archaeplastida
Gb_08011	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.03	Archaeplastida
Gb_12163	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_17625	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_22939	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_23035	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.05	Archaeplastida
Gb_25800	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.04	Archaeplastida
Gb_29932	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_30477	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_31472	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_31929	No alias	Uncharacterized mitochondrial protein AtMg00820...	0.07	Archaeplastida
Gb_32087	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.05	Archaeplastida
Gb_33741	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_36407	No alias	no hits & (original description: none)	0.06	Archaeplastida
Gb_39067	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_41823	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.05	Archaeplastida
Solyc06g150112.1.1	No alias	No annotation	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	10	126

External Links

No external refs found!

Gb_00777

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation