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  5. Gb_01246

Gb_01246


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 539.0)


Gene families : OG0016282 (Archaeplastida) Phylogenetic Tree(s): OG0016282_tree ,
OG_05_0022161 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0021576 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01246
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
MA_181514g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 907 968
IPR002885 Pentatricopeptide_repeat 439 466
IPR002885 Pentatricopeptide_repeat 338 385
IPR002885 Pentatricopeptide_repeat 469 517
IPR002885 Pentatricopeptide_repeat 178 225
IPR002885 Pentatricopeptide_repeat 633 680
IPR002885 Pentatricopeptide_repeat 734 782
IPR002885 Pentatricopeptide_repeat 604 631
IPR002885 Pentatricopeptide_repeat 250 276
IPR002885 Pentatricopeptide_repeat 808 832
IPR002885 Pentatricopeptide_repeat 278 307
IPR002885 Pentatricopeptide_repeat 545 569
IPR002885 Pentatricopeptide_repeat 573 601
IPR002885 Pentatricopeptide_repeat 875 902
No external refs found!