Gb_01366

Description : Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana (sp|p0c899|pp271_arath : 565.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_01366
Cluster	HCCA: Cluster_257

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00166520	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.02	Archaeplastida
AMTR_s00019p00110050	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
AMTR_s00029p00062420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g20730...	0.04	Archaeplastida
AMTR_s00032p00177680	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
AMTR_s00099p00036710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g71490...	0.02	Archaeplastida
AMTR_s00137p00065490	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
AT5G48910	LPA66	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
GSVIVT01031251001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.02	Archaeplastida
GSVIVT01033190001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.03	Archaeplastida
Gb_03137	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_03579	No alias	RNA editing factor (MEF12)	0.05	Archaeplastida
Gb_04144	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.04	Archaeplastida
Gb_05939	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_08744	No alias	RNA editing factor (OTP82)	0.05	Archaeplastida
Gb_09409	No alias	RNA editing factor (MEF19). RNA editing factor (OTP82)	0.06	Archaeplastida
Gb_10151	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.05	Archaeplastida
Gb_12004	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Gb_12240	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
Gb_16101	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.04	Archaeplastida
Gb_16828	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Gb_18359	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
Gb_20456	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.08	Archaeplastida
Gb_23605	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_25271	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_25604	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_26501	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_27176	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_27437	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Gb_32051	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_32448	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Gb_34299	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.08	Archaeplastida
Gb_36636	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_36806	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Gb_38504	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
Gb_39300	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_39514	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.06	Archaeplastida
Gb_40472	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_40749	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.04	Archaeplastida
MA_101084g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_10427342g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.04	Archaeplastida
MA_10431227g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_112594g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_112849g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
MA_114565g0020	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
MA_117676g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_122899g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_123466g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_124868g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
MA_131437g0010	No alias	RNA editing factor (MEF3)	0.03	Archaeplastida
MA_135075g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_136326g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_138190g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_140208g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_140591g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_14381g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
MA_14938g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_1673g0010	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.03	Archaeplastida
MA_16823g0010	No alias	RNA editing factor (MEF19)	0.03	Archaeplastida
MA_174226g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
MA_183278g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
MA_20599g0020	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.04	Archaeplastida
MA_20622g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_2473g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_25515g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_25584g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_2991g0010	No alias	RNA editing factor (MEF12)	0.04	Archaeplastida
MA_30632g0020	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_322292g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.05	Archaeplastida
MA_381817g0020	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_412g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_43497g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
MA_445076g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_472579g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_502206g0010	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.04	Archaeplastida
MA_50789g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
MA_57048g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
MA_62181g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_683665g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_68933g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.04	Archaeplastida
MA_73205g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
MA_742g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_75133g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_75255g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_805687g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
MA_81514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_84538g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
MA_9526611g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Smo328	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
Smo77659	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Solyc01g095690.2.1	No alias	Pentatricopeptide repeat-containing protein At4g01030,...	0.03	Archaeplastida
Solyc08g013850.1.1	No alias	RNA editing factor (CRR21)	0.03	Archaeplastida
Zm00001e000301_P001	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.02	Archaeplastida
Zm00001e011417_P001	No alias	RNA editing factor (CRR28)	0.03	Archaeplastida
Zm00001e016281_P001	No alias	Pentatricopeptide repeat-containing protein At3g62890...	0.03	Archaeplastida
Zm00001e023800_P003	No alias	RNA editing factor (CLB19)	0.03	Archaeplastida
Zm00001e030704_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
Zm00001e032679_P001	No alias	RNA editing factor (OTP80)	0.02	Archaeplastida
Zm00001e041048_P001	No alias	RNA editing factor (OTP86)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	471	496
IPR002885	Pentatricopeptide_repeat	239	261
IPR002885	Pentatricopeptide_repeat	396	444
IPR002885	Pentatricopeptide_repeat	164	211
IPR002885	Pentatricopeptide_repeat	296	343
IPR032867	DYW_dom	570	694

External Links

No external refs found!

Gb_01366

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation