Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 72 Blast hits to 69 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0004760 (LandPlants) Phylogenetic Tree(s): OG_05_0004760_tree ,
OG_06_0003098 (SeedPlants) Phylogenetic Tree(s): OG_06_0003098_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G16520 | |
Cluster | HCCA: Cluster_130 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G21420 | No alias | IBR domain containing protein | 0.07 | Archaeplastida | |
AT2G22940 | No alias | BEST Arabidopsis thaliana protein match is: zinc finger... | 0.07 | Archaeplastida | |
AT2G25360 | No alias | RING/U-box superfamily protein | 0.05 | Archaeplastida | |
AT2G25370 | No alias | RING/U-box superfamily protein | 0.11 | Archaeplastida | |
AT2G26135 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.04 | Archaeplastida | |
AT3G45460 | No alias | IBR domain containing protein | 0.14 | Archaeplastida | |
AT3G45470 | No alias | IBR domain containing protein | 0.09 | Archaeplastida | |
AT3G45480 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.13 | Archaeplastida | |
AT3G45500 | No alias | BEST Arabidopsis thaliana protein match is: RING/U-box... | 0.05 | Archaeplastida | |
AT3G45540 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.11 | Archaeplastida | |
AT3G45560 | No alias | zinc finger (C3HC4-type RING finger) family protein | 0.13 | Archaeplastida | |
AT3G45570 | No alias | RING/U-box protein with C6HC-type zinc finger domain | 0.14 | Archaeplastida | |
AT3G45580 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.07 | Archaeplastida | |
AT3G53690 | No alias | RING/U-box superfamily protein | 0.09 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
BP | GO:0008150 | biological_process | ND | Interproscan |
CC | GO:0009507 | chloroplast | ISM | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003993 | acid phosphatase activity | IEP | Neighborhood |
MF | GO:0004722 | protein serine/threonine phosphatase activity | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002156 | RNaseH_domain | 2 | 77 |
No external refs found! |