AT2G16520


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 72 Blast hits to 69 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0004760 (LandPlants) Phylogenetic Tree(s): OG_05_0004760_tree ,
OG_06_0003098 (SeedPlants) Phylogenetic Tree(s): OG_06_0003098_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G16520
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT2G21420 No alias IBR domain containing protein 0.07 Archaeplastida
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.07 Archaeplastida
AT2G25360 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G25370 No alias RING/U-box superfamily protein 0.11 Archaeplastida
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.04 Archaeplastida
AT3G45460 No alias IBR domain containing protein 0.14 Archaeplastida
AT3G45470 No alias IBR domain containing protein 0.09 Archaeplastida
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.13 Archaeplastida
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.05 Archaeplastida
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.11 Archaeplastida
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.13 Archaeplastida
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.14 Archaeplastida
AT3G45580 No alias RING/U-box protein with C6HC-type zinc finger 0.07 Archaeplastida
AT3G53690 No alias RING/U-box superfamily protein 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 2 77
No external refs found!