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Gb_01499


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0000041 (SeedPlants) Phylogenetic Tree(s): OG_06_0000041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01499
Cluster HCCA: Cluster_514

Target Alias Description ECC score Gene Family Method Actions
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.02 Archaeplastida
AT5G05290 EXPA2, ATHEXP... expansin A2 0.02 Archaeplastida
Gb_01504 No alias alpha-class expansin 0.04 Archaeplastida
Gb_07436 No alias Expansin-A4 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Gb_27617 No alias Putative expansin-A17 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g60770.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.02 Archaeplastida
MA_200461g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_86877g0010 No alias alpha-class expansin 0.02 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.02 Archaeplastida
Solyc03g115890.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 154 231
IPR009009 RlpA-like_DPBB 58 143
No external refs found!