AT2G16910 (AMS)

Aliases : AMS

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0000297 (LandPlants) Phylogenetic Tree(s): OG_05_0000297_tree ,
OG_06_0002202 (SeedPlants) Phylogenetic Tree(s): OG_06_0002202_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G16910
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00085090	evm_27.TU.AmTr_v1...	Transcription factor SCREAM2 OS=Arabidopsis thaliana	0.01	Archaeplastida
AMTR_s00016p00170610	evm_27.TU.AmTr_v1...	External stimuli response.temperature.ICE-CBF cold...	0.02	Archaeplastida
AMTR_s00102p00046460	evm_27.TU.AmTr_v1...	Nutrient uptake.iron uptake.reduction-based strategy...	0.01	Archaeplastida
AT3G26744	ATICE1, ICE1, SCRM	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT5G57150	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
AT5G65640	bHLH093	beta HLH protein 93	0.04	Archaeplastida
GSVIVT01008637001	No alias	External stimuli response.temperature.ICE-CBF cold...	0.04	Archaeplastida
GSVIVT01009234001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.01	Archaeplastida
GSVIVT01013720001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.08	Archaeplastida
GSVIVT01013744001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	Archaeplastida
GSVIVT01013745001	No alias	Transcription factor bHLH90 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01024008001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.07	Archaeplastida
Gb_05276	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Gb_05277	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Gb_15579	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os02g02820.1	No alias	transcription factor (bHLH)	0.1	Archaeplastida
LOC_Os04g23550.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os11g32100.1	No alias	transcription factor (bHLH). transcription factor (ICE1\|2)	0.05	Archaeplastida
MA_20585g0010	No alias	transcription factor (bHLH). transcription factor (ICE1\|2)	0.01	Archaeplastida
MA_336364g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_439607g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_63506g0010	No alias	transcription factor (bHLH). transcription factor (ICE1\|2)	0.02	Archaeplastida
MA_89559g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
MA_89559g0020	No alias	Transcription factor ABORTED MICROSPORES OS=Arabidopsis...	0.06	Archaeplastida
Mp2g02460.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp4g04920.1	No alias	transcription factor (bHLH). transcription factor (ICE1\|2)	0.03	Archaeplastida
Pp3c1_20960V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c3_15850V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c3_2760V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c8_18070V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Smo75047	No alias	External stimuli response.temperature.ICE-CBF cold...	0.02	Archaeplastida
Solyc02g079810.3.1	No alias	transcription factor (bHLH)	0.06	Archaeplastida
Solyc05g005300.2.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc06g051550.4.1	No alias	transcription factor (bHLH). iron uptake transcription factor FIT	0.04	Archaeplastida
Solyc08g062780.2.1	No alias	transcription factor (bHLH)	0.17	Archaeplastida
Solyc12g088130.3.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e008393_P001	No alias	transcription factor (bHLH). iron uptake transcription factor FIT	0.04	Archaeplastida
Zm00001e008463_P008	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e010525_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e021526_P001	No alias	transcription factor (bHLH). transcription factor (ICE1\|2)	0.04	Archaeplastida
Zm00001e025243_P003	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e030156_P003	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e040186_P002	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e040732_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048658	anther wall tapetum development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006863	purine nucleobase transport	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
BP	GO:0008216	spermidine metabolic process	IEP	Neighborhood
BP	GO:0009554	megasporogenesis	IEP	Neighborhood
BP	GO:0009556	microsporogenesis	IEP	Neighborhood
BP	GO:0009820	alkaloid metabolic process	IEP	Neighborhood
BP	GO:0009821	alkaloid biosynthetic process	IEP	Neighborhood
BP	GO:0010152	pollen maturation	IEP	Neighborhood
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
MF	GO:0015271	outward rectifier potassium channel activity	IEP	Neighborhood
MF	GO:0015645	fatty acid ligase activity	IEP	Neighborhood
BP	GO:0015851	nucleobase transport	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0030638	polyketide metabolic process	IEP	Neighborhood
BP	GO:0030639	polyketide biosynthetic process	IEP	Neighborhood
MF	GO:0031956	medium-chain fatty acid-CoA ligase activity	IEP	Neighborhood
BP	GO:0034293	sexual sporulation	IEP	Neighborhood
BP	GO:0035337	fatty-acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0035384	thioester biosynthetic process	IEP	Neighborhood
BP	GO:0035445	borate transmembrane transport	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0043934	sporulation	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0046713	borate transport	IEP	Neighborhood
MF	GO:0046715	active borate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0046949	fatty-acyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0048236	plant-type sporogenesis	IEP	Neighborhood
BP	GO:0048533	sporocyte differentiation	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	Neighborhood
BP	GO:0051321	meiotic cell cycle	IEP	Neighborhood
BP	GO:0051791	medium-chain fatty acid metabolic process	IEP	Neighborhood
BP	GO:0051792	medium-chain fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0072532	tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072533	tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072547	tricoumaroylspermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072548	dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072549	monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072550	triferuloylspermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072551	diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072552	monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	Neighborhood
MF	GO:0080072	spermidine:sinapoyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080073	spermidine:coumaroyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080074	spermidine:caffeoyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080075	spermidine:feruloyl CoA N-acyltransferase activity	IEP	Neighborhood
BP	GO:0080088	spermidine hydroxycinnamate conjugate biosynthetic process	IEP	Neighborhood
BP	GO:0080110	sporopollenin biosynthetic process	IEP	Neighborhood
MF	GO:0090439	tetraketide alpha-pyrone synthase activity	IEP	Neighborhood
BP	GO:0090691	formation of plant organ boundary	IEP	Neighborhood
BP	GO:0098661	inorganic anion transmembrane transport	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
BP	GO:1900150	regulation of defense response to fungus	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	315	360
IPR025610	MYC/MYB_N	10	148

External Links

No external refs found!

AT2G16910 (AMS)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation