Gb_02248


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02248
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00175040 evm_27.TU.AmTr_v1... Putative pectate lyase 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.09 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
AT1G04680 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.02 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.05 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.02 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.02 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.02 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.03 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.07 Archaeplastida
MA_103716g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.06 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.05 Archaeplastida
MA_10437227g0010 No alias pectate lyase 0.06 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.03 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.05 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.05 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.06 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_62112g0010 No alias pectate lyase 0.03 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.04 Archaeplastida
MA_91467g0010 No alias pectate lyase 0.03 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.03 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.05 Archaeplastida
Mp3g01000.1 No alias pectate lyase 0.03 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.03 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c13_1640V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c1_10180V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_10470V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c2_9460V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g071570.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.06 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.05 Archaeplastida
Solyc09g061890.3.1 No alias pectate lyase 0.05 Archaeplastida
Solyc11g008140.3.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e008755_P002 No alias pectate lyase 0.03 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.03 Archaeplastida
Zm00001e040624_P001 No alias pectate lyase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0001932 regulation of protein phosphorylation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
MF GO:0019901 protein kinase binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0042325 regulation of phosphorylation IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043549 regulation of kinase activity IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0045859 regulation of protein kinase activity IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051338 regulation of transferase activity IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Neighborhood
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 168 351
No external refs found!